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MNR_ensembl, genomic target for ENSG00000065923@66_37.T19.46505054 ()

MNR T19 at position 46505054 on chromosome X.

BLAST

flanking sequence: 150bp 300bp 600bp 1200bp each.
GCCCACTCCA TATCCCCAGA ATCAGACAGT GAGGCCCAGC AATCTGCACT TTAACAAGCC CAATGGGCAA TTCTGATGTA ACCTAAACGG TGAAAATTAT GAGTTTAGAT ACAATTCTCC TTTCCAACCT CACCTTCTTT CCCCACTCCC TTTTTTTTTT TTTTTTTTTG CATATCATTC CTTTCTTATA CTGATTTGGA AAAAAGATTT AGTACAGTTA TGCTCAAAAT GAGTACTGGG CCCATGTGGC ATGGCCAAGT AACTAAAACG TGATTCAGAA AACAGGCAGT GAAAGACACA CTTGGACGTG ATCAAGAGG
sequence fetched by ensembl-0.2, a tool for quick access to parts of large fasta sequences (written by Thomas Woerner).

SelTarbase: MNR_ensembl 66_37, human.


/data/MNR_ensembl/ensembl-0.2/ensembl -p -fa /data/ensembl/human_66_37/X.fa 319 46504904

sequence GCCCACTCCATATCCCCAGAATCAGACAGTGAGGCCCAGCAATCTGCACTTTAACAAGCCCAATGGGCAATTCTGATGTAACCTAAACGGTGAAAATTATGAGTTTAGATACAATTCTCCTTTCCAACCTCACCTTCTTTCCCCACTCCCTTTTTTTTTTTTTTTTTTTGCATATCATTCCTTTCTTATACTGATTTGGAAAAAAGATTTAGTACAGTTATGCTCAAAATGAGTACTGGGCCCATGTGGCATGGCCAAGTAACTAAAACGTGATTCAGAAAACAGGCAGTGAAAGACACACTTGGACGTGATCAAGAGG, GCCCACTCCATATCCCCAGAATCAGACAGTGAGGCCCAGCAATCTGCACTTTAACAAGCCCAATGGGCAATTCTGATGTAACCTAAACGGTGAAAATTATGAGTTTAGATACAATTCTCCTTTCCAACCTCACCTTCTTTCCCCACTCCCTTTTTTTTTTTTTTTTTTTGCATATCATTCCTTTCTTATACTGATTTGGAAAAAAGATTTAGTACAGTTATGCTCAAAATGAGTACTGGGCCCATGTGGCATGGCCAAGTAACTAAAACGTGATTCAGAAAACAGGCAGTGAAAGACACACTTGGACGTGATCAAGAGG.

HIGHLIGHT:
seqa mnr_start 1 seqa mnr_end 19 seqb mnr_start 151 seqb mnr_end 169.

$sequence: GCCCACTCCATATCCCCAGAATCAGACAGTGAGGCCCAGCAATCTGCACTTTAACAAGCCCAATGGGCAATTCTGATGTAACCTAAACGGTGAAAATTATGAGTTTAGATACAATTCTCCTTTCCAACCTCACCTTCTTTCCCCACTCCCTTTTTTTTTTTTTTTTTTTGCATATCATTCCTTTCTTATACTGATTTGGAAAAAAGATTTAGTACAGTTATGCTCAAAATGAGTACTGGGCCCATGTGGCATGGCCAAGTAACTAAAACGTGATTCAGAAAACAGGCAGTGAAAGACACACTTGGACGTGATCAAGAGG.

HIGHLIGHT:
seqa mnr_start 1 seqa mnr_end 19 seqb mnr_start 151 seqb mnr_end 169 seqa tract_start 1 seqa tract_end 4 seqb tract_start 14 seqb tract_end 17 seqa tract_start 1 seqa tract_end 4 seqb tract_start 93 seqb tract_end 96 seqa tract_start 1 seqa tract_end 4 seqb tract_start 141 seqb tract_end 144 seqa tract_start 1 seqa tract_end 19 seqb tract_start 151 seqb tract_end 169 seqa tract_start 1 seqa tract_end 6 seqb tract_start 200 seqb tract_end 205 seqa tract_start 1 seqa tract_end 4 seqb tract_start 226 seqb tract_end 229 seqa tract_start 1 seqa tract_end 4 seqb tract_start 265 seqb tract_end 268 seqa tract_start 1 seqa tract_end 4 seqb tract_start 279 seqb tract_end 282.

highlight_homology: seqb mnr_start 151 seqb mnr_end 169 seqb tract_start 14 seqb tract_end 17 seqb tract_start 93 seqb tract_end 96 seqb tract_start 141 seqb tract_end 144 seqb tract_start 151 seqb tract_end 169 seqb tract_start 200 seqb tract_end 205 seqb tract_start 226 seqb tract_end 229 seqb tract_start 265 seqb tract_end 268 seqb tract_start 279 seqb tract_end 282.

mysql:
SELECT ENSG, hugoID, line, lineG, 'cMNR', nucleotide, length, position, chromosome, strand FROM MNR_ensembl.human_cMNRs_66_37 jC LEFT JOIN MNR_ensembl.species_cMNRs_66_37 jE ON (jC.lineG = jE.line) WHERE chromosome = 'X' AND position = 46505054 UNION SELECT ENSG, hugoID, line, lineG, 'uMNR', nucleotide, length, position, chromosome, strand FROM MNR_ensembl.human_uMNRs_66_37 jU LEFT JOIN MNR_ensembl.species_cMNRs_66_37 jE ON (jU.lineG = jE.line) WHERE chromosome = 'X' AND position = 46505054 UNION SELECT ENSG, hugoID, line, lineG, 'ncrMNR', nucleotide, length, position, chromosome, strand FROM MNR_ensembl.human_ncrMNRs_66_37 jR LEFT JOIN MNR_ensembl.species_cMNRs_66_37 jE ON (jR.lineG = jE.line) WHERE chromosome = 'X' AND position = 46505054 UNION SELECT ENSG, hugoID, line, lineG, 'iMNR', nucleotide, length, position, chromosome, strand FROM MNR_ensembl.human_iMNRs_66_37 jI LEFT JOIN MNR_ensembl.species_cMNRs_66_37 jE ON (jI.lineG = jE.line) WHERE chromosome = 'X' AND position = 46505054;