previous   nextWOERNER2003 PDF released 200304
Oncogene, 2003 Apr 17, 22(15), 2226-2235. PubMed DOI
original model, supplemental material available
hugoIDaltnamestractMNRr_lengthcodingCRC%GC%EC%CC%
ABCF1TSAPAF027302.A10.312A10cMNR29.333.316.766.7
AIM2 [AIM2]AF024714.A10.1263A10cMNR51.733.350.064.3
ASTE1HT001AF113539.A11.1048A11cMNR78.053.325.0100.0
ATRATRMRNA;FRP1U76308.A10.2390A10cMNR24.520.67.323.5
BAX [BAX]L22473.G8.114G8cMNR41.537.324.054.8
C4orf6AC1;D070D82070.T10.234T10cMNR60.020.08.363.6
CASP5 [CASP5]U28015.A10.179A10cMNR47.638.611.490.5
CHD2AF006514.A10.4432A10cMNR12.94.78.345.5
ELAVL3PLE21;DKFZp547J036D26158.G9.288G9cMNR35.66.733.345.5
FBXO46HPDMPKY10936.T14.710T1413uMNR395.2100.091.7100.0
FLT3LGU29874.C9.4305C9cMNR35.733.325.058.8
FTOU79260;FATSO;MGC5149U79260.T15.755T1514uMNR381.86.741.7100.0
GARTGAGMRX54199.A10.2489A10cMNR20.06.78.327.3
IGF2R [IGF2R]IGFR2Y00285.G8.4089G8cMNR20.318.716.022.7
MARCKS [MACS]MACS;KCSD10522.A11.823A11cMNR70.360.025.070.6
MBD4 [MBD4]MED1AF072250.A10.1106A10cMNR24.620.19.930.0
MLH3AF195657.A9.1861A9cMNR15.90.07.9
MLH3AF195657.A8.2128A8cMNR4.73.45.3
MSH3 [MSH3]J04810.A8.1202A8cMNR42.038.919.453.1
MSH6 [MSH6]GTBPU54777.C8.3324C8cMNR23.927.215.837.0
OGTHRNT1U77413.T10.339T10cMNR27.717.213.036.4
PRKDCDNA-PKcs;XRCC7U63630.A10.19374A10cMNR23.514.922.123.5
PTHLHPTHL3;PTHrPM24350.A11.144A11cMNR76.173.350.093.3
RFC3POLACCB;HRFCL07541.A10.244A10cMNR12.010.85.652.4
SLC23A2YSPL2;SVCT2;SLC23A1AF058319.C9.1225C9cMNR42.040.041.781.8
SLC4A3bAE3U05596.C7.474C79cMNR36.726.733.350.0
SLC9A7 [APdelta3]NHE7NT_011568@GI@27501314.T19.3019048T1918iMNR87.2100.0100.0
SYCP1 [SYCP1]SCP1PRTX95654.A10.2986A10cMNR20.026.70.052.9
TAF1B [TAF1B]TFSL1CL39061.A11.289A11cMNR78.986.758.386.7
TCF7L2 [TCF-4]TCF-4Y11306.A9.1684A9cMNR43.414.03.053.8
TFAMTCF6L1;MITF1;TCF6L2M62810.A10.564A10cMNR57.76.78.379.2
TGFBR2 [BATRII]TGFB2RM85079.A10.709A10cMNR73.864.514.585.4
TMEM97MAC30XL19183.A10.558A10cMNR24.925.025.031.6
UVRAGX99050.A10.875A10cMNR32.47.88.354.5

34 MNR(s)

Complete tract list of reference WOERNER2003 (latest): The table shows the gene name, alternative gene names (if available), the tract name (accession number, nucleotide, length, position), the tract type (nucleotide and length), the reported tract length (if it was differing from the current annotated length), the type of tract by annotation (coding: cMNR, untranslated: uMNR5/uMNR3, intronic: iMNR, mixed: xMNR, a question mark tags MNRs with unclear annotation), and finally the mutation frequencies of all investigated entities (CRC% for colorectal, GC% for gastric, EC% for endometrial, a.s.o.). Mutation frequencies with greenish background represent significantly elevated ones and such with reddish significantly reduced mutation frequencies, respectively.
You can choose the tract name to get detail information for the respective tract (sequence surrounding the tract, primer system for fragment analysis, detail mutational status of MSI-H colorectal cancer cell lines, and crosslinks to Ensembl, EntrezGene, a. o.). You also can pick the mutation frequency of each entity column to get to the respective position of the complete tract list of this entity (loading can take a while).


SelTarbase version latest, release 201307, last updated 20130701.

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