previous  nextX99050.A10.875 (UVRAG) -> ENSG00000198382@66_37.A10.75694431
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Tract / statusA10 / cMNR -> Tx!   MNR_ensembl
First published byKIM2002A PubMed
Accession numberX99050 gi:2102666
Gene (chromosome)UVRAG  ( 11 )   SOURCE
EnsemblENSG00000198382   SMART   GermOnline   GeneCards
NCBIEntrez Gene 7405   Unigene Hs.202470 (SAGE)   GeneCards 7405 

Mutation rate [%] Colon Endometrium Stomach Urothel
Cancer Adenoma Culture Cancer Cancer Cancer
32.454.58.37.8
(n=68)(n=11)(n=12)(n=103)

Genomic sequence
BLAST WWW
BLAST local
GCTGGTAATT AAGTTACTCA AGAGTTCCAT AAGTTTGATG AGTATTAAAA TGTTTTAAGC CATTATTTAT TTTTAAACAT TGTGAGTATG TAATTATTCA TAGTCATGAC ATTTATATTC ATAAATATAC CTGTGATTTT ATTTATTTAG AAAAAAAAAA GTGAATGCCT GCAGTTAAAA ATTTTGGTGC TTCAGAATGA ACTGGAACGG CAGAAGAAAG CTTTGGGACG GGAGGTGGCA TTACTGCATA AGCAACAAAT TGCATTACAA GACAAAGGTG AGTGGAAATA CCATACAAAC AGCCTAACCT
MNR, transcribed, primer.
PCR systemsense gCCATTATTTATTTTTAAACATTgTgAg, antisense AgCTTTCTTCTgCCgTTCC, product length 164, Ta 57.
Transcript sequenceCAGAACTGTG TTCGCAATTC TTACGATGTC TTCTCTTTGC TACGGCTTCA TAGAGCCCAG TGTGCAATTA AACAGACTCA GGTAACTGTT CAGAAAATTG GAAAGGAAAT TGAAGAAAAA CTAAGACTCA CATCTACAAG CAATGAACTG AAAAAAAAAA GTGAATGCCT GCAGTTAAAA ATTTTGGTGC TTCAGAATGA ACTGGAACGG CAGAAGAAAG CTTTGGGACG GGAGGTGGCA TTACTGCATA AGCAACAAAT TGCATTACAA GACAAAGGAA GTGCATTTTC AGCTGAGCAC CTCAAACTTC
MNR, homologue to genomic MNR region.
Transcripts#ENSTtranscribedtranslatedATGSTOPlengthMNRENSPlocate
1ENST000003561361124223424123945ENSP00000348455show
2ENST000005284201128620832463686ENSP00000436039show
3ENST0000052826400116515511ENSP00000433613show
4ENST0000052587200713--
5ENST000005334541075317371823164ENSP00000431256show
6ENST0000053050110052592--
7ENST000005318181093119153152518ENSP00000434082show
8ENST00000532130104781462183165ENSP00000436270show
9ENST000005251830012741325ENSP00000433414show
10ENST000005392880054515291615ENSP00000438041show
11ENST000005388700029810661312ENSP00000439016show
Shown are all Ensembl transcripts (ENSTs) currently annotated for the respective Ensembl gene (ENSG), Ensembl rel. 66_37.
final status: cMNR (cMNR) .

Culture data cell line   mutated   allele(s)  reference
Co115 0 wt INTERN9999
Colo60H 0 wt INTERN9999
HCT116 1 m1wt* IONOV2004B / *INTERN9999
KM12 1 m1wt INTERN9999
LoVo 1 m2wt* IONOV2004B / *INTERN9999
LS174T 1 m1wt INTERN9999
LS180 1 m1wt* IONOV2004B / *INTERN9999
RKO 1 m1wt* IONOV2004B / *INTERN9999
SW48 0 wt INTERN9999
TC7 0 wt INTERN9999
TC71 0 wt INTERN9999

Show consequences concerning peptide sequence(s) of frameshift alleles m2/m1/p1/p2.


SelTarbase version latest, release 201307, last updated 20130701.

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