previous  nextU05596.C7.474 (SLC4A3) -> ENSG00000114923@66_37.C7.220494111
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Tract / statusC7, reported length 9 / cMNR -> Tx!   MNR_ensembl
First published byWOERNER2001 PubMed
Accession numberU05596 gi:476221
Gene (chromosome)SLC4A3  ( 2 )   SOURCE
alt. namesbAE3
EnsemblENSG00000114923   SMART   GermOnline   GeneCards
NCBIEntrez Gene 6508   Unigene Hs.1176 (SAGE)   GeneCards 6508 

Mutation rate [%] Colon Endometrium Stomach Urothel
Cancer Adenoma Culture Cancer Cancer Cancer
36.750.033.326.7
(n=30)(n=10)(n=12)(n=15)

Genomic sequence
BLAST WWW
BLAST local
CACACCAGGA GAAAGAGGAA GAAGGAGAAA ACCTCTGCTC CTCCCTCCGA GGGGACCCCT CCCATCCAGG AGGAGGGGGG AGCTGGAGTG GATGAGGAAG AGGAGGAAGA GGAGGAAGAG GAAGGAGAAT CTGAGGCAGA ACCTGTGGAG CCCCCCCACT CAGGGACCCC ACAGAAGGCA AAGGTAGGGG CTTCCCTTTG GAGGGGTGGC AGGTCAGGGG TCAGGGAGGG GTACAGAGAG GAGGAGAGGA GTGCGTGTTG GGGGCCTGTG TGAGGCTGGG TAGGGTTGGG GGCTGTATGG TAGGTCGGG
MNR, transcribed, primer.
PCR system1sense TggAgTggATgAggAAgAgg, antisense CTTCTgTggggTCCCTgAg, product length 94, Ta 62.
Transcript sequenceCACACCAGGA GAAAGAGGAA GAAGGAGAAA ACCTCTGCTC CTCCCTCCGA GGGGACCCCT CCCATCCAGG AGGAGGGGGG AGCTGGAGTG GATGAGGAAG AGGAGGAAGA GGAGGAAGAG GAAGGAGAAT CTGAGGCAGA ACCTGTGGAG CCCCCCCACT CAGGGACCCC ACAGAAGGCA AAGTTCTCCA TTGGAAGTGA CGAGGATGAC AGTCCAGGCC TCCCTGGGAG GGCTGCTGTC ACCAAGCCCC TGCCCTCGGT GGGCCCACAC ACTGACAAGA GCCCCCAGCA CTCCAGCAGC TCCCCCAGC
MNR, homologue to genomic MNR region.
Transcripts#ENSTtranscribedtranslatedATGSTOPlengthMNRENSPlocate
1ENST000003580551151342124454975ENSP00000350756show
2ENST000003737601119338924134655ENSP00000362865show
3ENST000002730631121539954246677ENSP00000273063show
4ENST000004251411121317703936675ENSP00000396863show
5ENST000003171511111938184069581ENSP00000314006show
6ENST00000497589100835497--
7ENST0000041374300110794792ENSP00000414722show
8ENST000004169100026261862ENSP00000403160show
9ENST00000444906002227547ENSP00000398628show
10ENST000003737621127040504300732ENSP00000362867show
11ENST0000035625110248136844210732ENSP00000348586show
Shown are all Ensembl transcripts (ENSTs) currently annotated for the respective Ensembl gene (ENSG), Ensembl rel. 66_37.
final status: cMNR (cMNR) .

Culture data cell line   mutated   allele(s)  reference
Co115 0 wt WOERNER2001
Colo60H 0 wt WOERNER2001
HCT116 0 wt WOERNER2001
KM12 1 wtp1 WOERNER2001
LoVo 0 wt WOERNER2001
LS174T 1 wtp1 WOERNER2001
LS180 1 wtp1 WOERNER2001
RKO 1 p1p2 WOERNER2001
SW48 0 wt WOERNER2001
TC71 1 m1wt INTERN9999

Show consequences concerning peptide sequence(s) of frameshift alleles m2/m1/p1/p2.


1 primers derived from WOERNER2001.

SelTarbase version latest, release 201307, last updated 20130701.

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