previous  nextNT_022853@GI@22042092.T25.2920753 (KIT) -> ENSG00000157404@66_37.T25.55598212
         ? HELP ?
Tract / statusT25 / iMNR   MNR_ensembl
First published byPARSONS1995B PubMed
Accession numberNT_022853 gi:22042092
Gene (chromosome)KIT  ( 4 )   SOURCE
alt. namesBAT25;c-kit;SCFR
EnsemblENSG00000157404   SMART   GermOnline   GeneCards
NCBIEntrez Gene 3815   Unigene Hs.479754 (SAGE)   GeneCards 3815 

Mutation rate [%] Colon Endometrium Stomach Urothel
Cancer Adenoma Culture Cancer Cancer Cancer
90.1100.079.889.9
(n=2836)(n=46)(n=238)(n=582)

Genomic sequence
BLAST WWW
BLAST local
TCCCGCCATC ATGGAGGATG ACGAGTTGGC CCTAGACTTA GAAGACTTGC TGAGCTTTTC TTACCAGGTG GCAAAGGGCA TGGCTTTCCT CGCCTCCAAG AATGTAAGTG GGAGTGATTC TCTAAAGAGT TTTGTGTTTT GTTTTTTTGA TTTTTTTTTT TTTTTTTTTT TTTTTGAGAA CAGAGCATTT TAGAGCCATA GTTAAAATGC AGAATGTCAT TTTGAAGTGT GGTAACCAAA AGCAGAGGAA ATTTAGTTTC TTCATGTTCC AACTGCTGTC TCTTTGGAAT TCCTGTTCTA ATTTATAAGC TGTAAAGTAC AAGCC
MNR, transcribed, primer.
PCR systemsense TCgCCTCCAAgAATgTAAgT, antisense TCTgCATTTTAACTATggCTC, product length 124, Ta 55.
Transcript sequenceTCCCGCCATC ATGGAGGATG ACGAGTTGGC CCTAGACTTA GAAGACTTGC TGAGCTTTTC TTACCAGGTG GCAAAGGGCA TGGCTTTCCT CGCCTCCAAG AATTGTATTC ACAGAGACTT GGCAGCCAGA AATATCCTCC TTACTCATGG TCGGATCACA AAGATTTGTG ATTTTGGTCT AGCCAGAGAC ATCAAGAATG ATTCTAATTA TGTGGTTAAA GGAAACGCTC GACTACCTGT GAAGTGGATG GCACCTGAAA GCATTTTCAA CTGTGTATAC ACGTTTGAAA GTGACGTCTG GTCCTATGGG ATTTTTCTTT GGGAG
MNR, homologue to genomic MNR region.
Transcripts#ENSTtranscribedtranslatedATGSTOPlengthMNRENSPlocate
1ENST00000288135009830295186ENSP00000288135show
2ENST00000412167009830173470ENSP00000390987show
3ENST0000051458200538--
4ENST0000051295900746--
5ENST00000536403008813301326ENSP00000443604show
Shown are all Ensembl transcripts (ENSTs) currently annotated for the respective Ensembl gene (ENSG), Ensembl rel. 66_37.
final status: unclear (iMNR) .

Culture data cell line   mutated   allele(s)  reference
Co115 1 m_97 INTERN9999
COGA1 1 - VECSEYSEMJEN2002
Colo60H 1 m_98_103 INTERN9999
CW2 1 - CGP_SANGER
DLD1 1 m_105* KU1999 / *INTERN9999
Gp2D 1 m_98_* CGP_SANGER / *INTERN9999
GP5d 1 - CGP_SANGER
HCT116 1 m_102* KU1999 / *INTERN9999
HCT15 1 - SURAWEERA2002
HCT8/HRT18 1 m_106_* KU1999 / *INTERN9999
HDC108 1 m_102_107 INTERN9999
HDC143 1 m_104_ INTERN9999
HDC9 1 m_97_ INTERN9999
KM12 1 m_99_* CGP_SANGER / *INTERN9999
LIM1215 1 m_100_ INTERN9999
LoVo 1 m_101_103* KU1999 / *INTERN9999
LS174T 1 m_102* KU1999 / *INTERN9999
LS180 1 m_102 INTERN9999
LS411 1 m_100 INTERN9999
LS411N 1 - CGP_SANGER
NCIH630 1 - CGP_SANGER
RKO 1 m_98_* CGP_SANGER / *INTERN9999
SNU-1040 1 - KU1999
SNU-1047 1 - KU1999
SNU-1544 1 m KU2010A
SNU-1684 1 m KU2010A
SNU-1746 1 m KU2010A
SNU-175 1 - KU1999
SNU-407 1 - KU1999
SNU-769A 1 - KU1999
SNU-769B 1 - KU1999
SNU-C2A 1 - KU1999
SNU-C2B 1 - CGP_SANGER
SNU-C4 1 - KU1999
SW48 1 m_98_101* CARETHERS2000 / *INTERN9999
TC7 1 m_102 INTERN9999
TC71 1 m_105 INTERN9999
VaCo432 1 m_102_ INTERN9999
VaCo457 1 m_101_105 INTERN9999
VaCo5 1 m_103_107 INTERN9999
VaCo6 1 m_103 INTERN9999
VaCo670 1 - BERG2000

SelTarbase version latest, release 201307, last updated 20130701.

? HELP ?