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Tract / statusA10 / cMNR -> Tx!   MNR_ensembl
First published byKIM2002A PubMed
Accession numberM62810 gi:188563
Gene (chromosome)TFAM  ( 10 )   SOURCE
alt. namesTCF6L1;MITF1;TCF6L2
EnsemblENSG00000108064   SMART   GermOnline   GeneCards
NCBIEntrez Gene 7019   Unigene Hs.642966 (SAGE)   GeneCards 7019 

Mutation rate [%] Colon Endometrium Stomach Urothel
Cancer Adenoma Culture Cancer Cancer Cancer
57.779.28.36.7
(n=130)(n=24)(n=12)(n=15)

Genomic sequence
BLAST WWW
BLAST local
TTATTTATAG ATATATCAAG ATGCTTATAG GGCGGAGTGG CAGGTATATA AAGAAGAGAT AAGCAGATTT AAAGAACAGC TAACTCCAAG TCAGATTATG TCTTTGGAAA AAGAAATCAT GGACAAACAT TTAAAAAGGA AAGCTATGAC AAAAAAAAAA GTGAGTATCA TTGAAATACT TTTTTCTTAT GGTAAAGAAT TGAGATTTAT ATAACTATGA ATATAGGTAG TTTTCTCTTA ATAGGCAAAT AAAATATGGT AGAATGTCAT CAAGTATTCT TCAGTTAGGC AGAAGTGGGA TAGTTCTCTT
MNR, transcribed, primer.
PCR systemsense CTTTggAAAAAgAAATCATggAC, antisense AACTATCCCACTTCTgCCTAACTg, product length 204, Ta 59.
Transcript sequenceAAAGAAAAAA ATATATCAAG ATGCTTATAG GGCGGAGTGG CAGGTATATA AAGAAGAGAT AAGCAGATTT AAAGAACAGC TAACTCCAAG TCAGATTATG TCTTTGGAAA AAGAAATCAT GGACAAACAT TTAAAAAGGA AAGCTATGAC AAAAAAAAAA GAGTTAACAC TGCTTGGAAA ACCAAAAAGA CCTCGTTCAG CTTATAACGT TTATGTAGCT GAAAGATTCC AAGAAGCTAA GGGTGATTCA CCGCAGGAAA AGCTGAAGAC TGTAAAGGAA AACTGGAAAA ATCTGTCTGA CTCTGAAAAG
MNR, homologue to genomic MNR region.
Transcripts#ENSTtranscribedtranslatedATGSTOPlengthMNRENSPlocate
1ENST000004875191152712685414958ENSP00000420588show
2ENST000003738991001121702--
3ENST0000037389511115760973546ENSP00000363002show
4ENST00000395377112662663376ENSP00000378776show
Shown are all Ensembl transcripts (ENSTs) currently annotated for the respective Ensembl gene (ENSG), Ensembl rel. 66_37.
final status: cMNR (cMNR) .

Culture data cell line   mutated   allele(s)  reference
Co115 1 m1wt WOERNER2010
Colo60H 0 wt WOERNER2010
DLD1 1 m1wt WOERNER2010
HCT116 1 m1wt WOERNER2010
HCT15 1 m1wt WOERNER2010
HCT8/HRT18 1 m1wt WOERNER2010
HDC108 0 wt WOERNER2010
HDC143 0 wt WOERNER2010
HDC9 1 m2m1wt WOERNER2010
K073A_culture 1 m1wt WOERNER2010
KM12 1 m1wt WOERNER2010
LIM1215 0 wt WOERNER2010
LoVo 1 m1wt WOERNER2010
LS174T 1 m3m2m1wt WOERNER2010
LS180 1 m1wt WOERNER2010
LS411 1 m1wt GUO2011
RKO 1 m2m1wt WOERNER2010
SW48 0 wt WOERNER2010
TC7 1 m1wt WOERNER2010
TC71 1 m1wt WOERNER2010
VaCo432 1 m1wt WOERNER2010
VaCo457 1 m1wt WOERNER2010
VaCo5 1 m1wt WOERNER2010
VaCo6 1 m2m1wt WOERNER2010

Show consequences concerning peptide sequence(s) of frameshift alleles m2/m1/p1/p2.


SelTarbase version latest, release 201307, last updated 20130701.

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