previous  nextL38961.T21.2284 (STT3A) -> ENSG00000134910@66_37.T21.125490766
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Tract / statusT21, reported length 22 / uMNR3   MNR_ensembl
First published bySURAWEERA2002 PubMed
Accession numberL38961 gi:624703
Gene (chromosome)STT3A  ( 11 )   SOURCE
alt. namesNR-22;tmppB5;ITM1
EnsemblENSG00000134910   SMART   GermOnline   GeneCards
NCBIEntrez Gene 3703   Unigene Hs.504237 (SAGE)   GeneCards 3703 

Mutation rate [%] Colon Endometrium Stomach Urothel
Cancer Adenoma Culture Cancer Cancer Cancer
89.177.894.7
(n=174)(n<5)(n=45)(n=38)

Genomic sequence
BLAST WWW
BLAST local
CTCCAAAGTT GATCTGATTG TAAATATTAA ACTGACATCT TTATGTTGCA GGTAAAGGAC CTGGATAATC GAGGCTTGTC AAGGACATAA ATGTCACGTC CAGCTCTGAT ATGCTTCGCA CTGAGCACAT CACATTTAGG ACGTTGAAGA TTTTTTTTTT TTTTTTTTTT TAATATGCAG TTTGTAAGAA CAAAACTGGA TGGCATCAGA ATTGTCTGGA AGTTTTGTCT TGGGCAGTAT GGGCTGGGCC AAATGAAATG ATTTTTATAA TTCTAAACAG GTTACCAAAT GAAATGTCAT GGCTTTACTT TGGTCAATTA A
MNR, transcribed, primer.
PCR system1sense gAggCTTgTCAAggACATAA, antisense AATTCggATgCCATCCAgTTA, product length 142, Ta .
Transcript sequenceTGTCCTGGAG GAAGGCTATA CCACAGAACA TTGGCTGGTC AGGATATACA AGGTAAAGGA CCTGGATAAT CGAGGCTTGT CAAGGACATA AATGTCACGT CCAGCTCTGA TATCTTCGCA CTGAGCACAT CACATTTAGG ACGTTGAAGA TTTTTTTTTT TTTTTTTTTT TTAATATGCA GTTTGTAAGA ACAAAACTGG ATGGCATCCG AATTGTCTGG AAGTTTTGTC TTGGGCATGA TGGGCTGGGC CAAATGAAAT GATTTTTATA ATTCTAAACA GGTTACCAAA TGAAATGTCA TGGCTTTACT TTGGTCAATT AA
MNR, homologue to genomic MNR region.
Transcripts#ENSTtranscribedtranslatedATGSTOPlengthMNRENSPlocate
1ENST0000052760600212572569ENSP00000436558show
2ENST0000039270810160227828282338ENSP00000376472show
3ENST00000534472001561--
4ENST000005291960020723252402ENSP00000436962show
5ENST000005314910024120832160ENSP00000432820show
6ENST0000052565200300612607ENSP00000435810show
7ENST0000052988600190544542ENSP00000432912show
8ENST0000052621300555--
9ENST0000052745600481--
10ENST0000052543100552--
11ENST00000526726003588582ENSP00000436523show
12ENST0000053100100325--
13ENST0000052463900582--
14ENST0000053159900973--
15ENST0000052594610013831028--
16ENST0000052636400617--
Shown are all Ensembl transcripts (ENSTs) currently annotated for the respective Ensembl gene (ENSG), Ensembl rel. 66_37.
final status: uMNR3 (uMNR3) .

Culture data cell line   mutated   allele(s)  reference
HCT15 1 - SURAWEERA2002
HCT8/HRT18 1 - BUHARD2004
LoVo 1 - SURAWEERA2002

1 primers derived from SURAWEERA2002.

SelTarbase version latest, release 201307, last updated 20130701.

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