previous  nextL19183.A10.558 (TMEM97) -> ENSG00000109084@59_37d.A10.26653807
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Tract / statusA10 / cMNR -> Tx!   MNR_ensembl
First published byWOERNER2001 PubMed
Accession numberL19183 gi:307154
Gene (chromosome)TMEM97  ( 17 )   SOURCE
alt. namesMAC30X
EnsemblENSG00000109084   SMART   GermOnline   GeneCards
NCBIEntrez Gene 27346   Unigene Hs.199695 (SAGE)   GeneCards 27346 

Mutation rate [%] Colon Endometrium Stomach Urothel
Cancer Adenoma Culture Cancer Cancer Cancer
24.931.625.025.0
(n=201)(n=19)(n=12)(n=24)

Genomic sequence
BLAST WWW
BLAST local
CTCCAAAGCC AGTGGTTTCA AGGGACAAAG ACCTGAGACT TTGCATGAAC GGTTAACCCT TGTGTCTGTC TATGCCCCCT ACTTACTCAT CCCATTCATA CTTTTAATTT TCATGTTGCG GAGCCCCTAC TACAAGTATG AAGAGAAAAG AAAAAAAAAA TGAAGGAAAC AACCACTGGC CCAGGGTAGA GATGCCTACA GGGTGGTTGC TTGTTGGATA CAATACAAGG AACACTGCTC AGAACCCACG TCTTCAGCAG CATTTGAAAC ACTGGCAGCA ATGCACAAGA GCAAGATGGT GTCAGGAACC
MNR, transcribed, primer.
PCR system1sense TgTTgCggAgCCCCTAC, antisense AACCACCCTgTAggCATCTC, product length 95, Ta 60.
Transcript sequenceCTCCAAAGCC AGTGGTTTCA AGGGACAAAG ACCTGAGACT TTGCATGAAC GGTTAACCCT TGTGTCTGTC TATGCCCCCT ACTTACTCAT CCCATTCATA CTTTTAATTT TCATGTTGCG GAGCCCCTAC TACAAGTATG AAGAGAAAAG AAAAAAAAAA TGAAGGAAAC AACCACTGGC CCAGGGTAGA GATGCCTACA GGGTGGTTGC TTGTTGGATA CATACAGGAA CACTGCTCAG AACCCACGTC TTCAGCAGCA TTTGAAACAC TGGCAGCAAT GCACAAGAGC AAGATGGTGT CAGGAACCAT
MNR, homologue to genomic MNR region.
Transcripts#ENSTtranscribedtranslatedATGSTOPlengthMNRENSPlocate
1ENST00000226230111066372528624ENSP00000226230show
2ENST00000336687114746842114671ENSP00000338750show
Shown are all Ensembl transcripts (ENSTs) currently annotated for the respective Ensembl gene (ENSG), Ensembl rel. 66_37.
final status: cMNR (cMNR) .

Culture data cell line   mutated   allele(s)  reference
Co115 0 wt WOERNER2001
Colo60H 0 wt WOERNER2001
HCA7 0 wt WILLIAMS2010
HCT116 1 m1wt WOERNER2001
KM12 0 wt WOERNER2001
LIM1215 0 wt WILLIAMS2010
LIM1899 1 m1wt WILLIAMS2010
LIM2405 0 wt WILLIAMS2010
LIM2408 0 wt WILLIAMS2010
LIM2537 1 m1wt WILLIAMS2010
LIM2550 1 m1wt WILLIAMS2010
LIM2551 0 wt WILLIAMS2010
LoVo 0 wt WOERNER2001
LS174T 0 wt WOERNER2001
LS180 0 wt WOERNER2001
RKO 1 m1wt WOERNER2001
SW48 0 wt WOERNER2001
TC7 0 wt INTERN9999
TC71 1 m1wt INTERN9999

Show consequences concerning peptide sequence(s) of frameshift alleles m2/m1/p1/p2.


1 primers derived from WOERNER2001.

SelTarbase version latest, release 201307, last updated 20130701.

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