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Tract / statusA10 / cMNR -> Tx!   MNR_ensembl
First published byDUVAL2001A PubMed
Accession numberL07541 gi:1498258
Gene (chromosome)RFC3  ( 13 )   SOURCE
alt. namesPOLACCB;HRFC
EnsemblENSG00000133119   SMART   GermOnline   GeneCards
NCBIEntrez Gene 5983   Unigene Hs.115474 (SAGE)   GeneCards 5983 

Mutation rate [%] Colon Endometrium Stomach Urothel
Cancer Adenoma Culture Cancer Cancer Cancer
12.052.45.610.8
(n=150)(n=21)(n=54)(n=93)

Genomic sequence
BLAST WWW
BLAST local
TGGGATTAAC AAAGTTAAAA CATGAATGGT GGTTATCTCA AGTTTTACTT TGTGTAATAA AAGGAAAACC AATGAAAATA CAAAAGAGTG GGGAAATAGG CAATAAATAA ATGTTAAAAA TATCTTTTTC TTTGTCCACA GACTCCATCT AAAAAAAAAA TTGAAATTAG CACCATTGCA AGTAACTACC ACCTTGAAGT TAATCCTAGG TAAGTTACTA CTATATAGAA ATTAAGTATT TTTAAAGAAA TTGGTTTTGG GCTTTCTTTT TTTAAAAGAT TGAAACCCTT TTTTGAAATA AATTGATACG
MNR, transcribed, primer.
PCR systemsense TTTCTTTgTCCACAgACTCCATC, antisense gTTACTTgCAATggTgCTAATTTC, product length 60, Ta .
Transcript sequenceCTGGTGCAGT GTGGTGACTT TCCTCATCTG TTAGTGTACG GACCATCAGG TGCTGGAAAA AAGACAAGAA TTATGTGTAT TTTACGTGAA CTTTATGGTG TTGGAGTGGA AAAATTGAGA ATTGAACATC AGACCATCAC AACTCCATCT AAAAAAAAAA TTGAAATTAG CACCATTGCA AGTAACTACC ACCTTGAAGT TAATCCTAGT GATGCTGGAA ATAGTGACCG AGTAGTCATT CAGGAGATGT TGAAAACAGT GGCACAATCA CAACAACTTG AAACAAACTC TCAAAGGGAT TTTAAAGTGG
MNR, homologue to genomic MNR region.
Transcripts#ENSTtranscribedtranslatedATGSTOPlengthMNRENSPlocate
1ENST000003800711113112022402365ENSP00000369411show
2ENST000004344251111110291461345ENSP00000401001show
Shown are all Ensembl transcripts (ENSTs) currently annotated for the respective Ensembl gene (ENSG), Ensembl rel. 66_37.
final status: cMNR (cMNR) .

Culture data cell line   mutated   allele(s)  reference
Co115 1 m1wt WOERNER2010
Colo60H 0 wt WOERNER2010
DLD1 1 m1 YOU2007
HCT116 1 m1wt YOU2007
HCT8/HRT18 1 m1 YOU2007
HDC108 0 wt WOERNER2010
HDC9 0 wt WOERNER2010
KM12 0 wt WOERNER2010
LOVO 1 m1wt YOU2007
LS174T 1 m1wt YOU2007
LS180 1 m1wt WOERNER2010
RKO 0 wt WOERNER2010
SNU-C2A 0 wt YOU2007
SNU-C4 1 m1wt YOU2007
SW48 0 wt WOERNER2010
TC7 1 wtp1 WOERNER2010
TC71 0 wt WOERNER2010
VaCo432 1 m1wt WOERNER2010
VaCo457 0 wt WOERNER2010
VaCo5 1 m1wt WOERNER2010
VaCo6 0 wt WOERNER2010

Show consequences concerning peptide sequence(s) of frameshift alleles m2/m1/p1/p2.


SelTarbase version latest, release 201307, last updated 20130701.

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