previous  nextJ04810.T5.1218 (MSH3) -> ENSG00000113318@66_37.T5.79970931
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Tract / statusT5 / cMNR -> Tx!   MNR_ensembl
First published bySWISHER1998 PubMed
Accession numberJ04810 gi:181841
Gene (chromosome)MSH3  ( 5 )   SOURCE
EnsemblENSG00000113318   SMART   GermOnline   GeneCards
NCBIEntrez Gene 4437   Unigene Hs.280987 (SAGE)   GeneCards 4437 

Mutation rate [%] Colon Endometrium Stomach Urothel
Cancer Adenoma Culture Cancer Cancer Cancer
0.00.00.00.0
(n=32)(n=7)(n=28)(n=28)

Genomic sequence
BLAST WWW
BLAST local
TTTTTCTTTA ATTATTATTA AATGTGAATC CCCTAATCAA GCTGGATGAT GCTGTAAATG TTGATGAGAT AATGACTGAT ACTTCTACCA GCTATCTTCT GTGCATCTCT GAAAATAAGG AAAATGTTAG GGACAAAAAA AAGGGCAACA TTTTTATTGG CATTGTGGTA AGTACTTTGC AGGTGAGGAA CAAATGTTAG ATGTTCATGG TATCTCTAAA TATGATCTAT CATGTATGGT TTATAATAAG GATATCTGAT GAAGTGTACC TTCAGATAAT TATACAAGAA AAACATTTTT CTCAC
MNR, transcribed, primer.
Transcript sequenceAATCTACACT TATTGGAGAA GATGTGAATC CCCTAATCAA GCTGGATGAT GCTGTAAATG TTGATGAGAT AATGACTGAT ACTTCTACCA GCTATCTTCT GTGCATCTCT GAAAATAAGG AAAATGTTAG GGACAAAAAA AAGGGCAACA TTTTTATTGG CATTGTGGGA GTGCAGCCTG CCACAGGCGA GGTTGTGTTT GATAGTTTCC AGGACTCTGC TTCTCGTTCA GAGCTAGAAA CCCGGATGTC AAGCCTGCAG CCAGTAGAGC TGCTGCTTCC TTCGGCCTTG TCCGAGCAAA CAGAG
MNR, homologue to genomic MNR region.
Transcripts#ENSTtranscribedtranslatedATGSTOPlengthMNRENSPlocate
1ENST000002650811181349540921237ENSP00000265081show
2ENST0000051253100531--
3ENST0000051225800677--
4ENST00000535995111338843371130ENSP00000440204show
Shown are all Ensembl transcripts (ENSTs) currently annotated for the respective Ensembl gene (ENSG), Ensembl rel. 66_37.
final status: cMNR (cMNR) .

Culture data cell line   mutated   allele(s)  reference
DLD1 0 wt YOU2007
HCT116 0 wt YOU2007
HCT8/HRT18 0 wt YOU2007
LOVO 0 wt YOU2007
LS174T 0 wt YOU2007
SNU-C2A 0 wt YOU2007
SNU-C4 0 wt YOU2007

Show consequences concerning peptide sequence(s) of frameshift alleles m2/m1/p1/p2.


SelTarbase version latest, release 201307, last updated 20130701.

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