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Tract / statusA5 / cMNR -> Tx!   MNR_ensembl
First published byWOODFORDRICHENS2001 PubMed
Accession numberENSG00000141646
Gene (chromosome)SMAD4  ( 18 )   SOURCE
alt. namesDPC4;MADH4
EnsemblENSG00000141646   SMART   GermOnline   GeneCards
NCBIEntrez Gene 4089   Unigene Hs.75862 (SAGE)   GeneCards 4089 

Mutation rate [%] Colon Endometrium Stomach Urothel
Cancer Adenoma Culture Cancer Cancer Cancer
0.0
(n=19)

Genomic sequence
BLAST WWW
BLAST local
GAAATTGGAG ACATATTTGA TTTAAAAGGA AAAACTTGAA CAAATGGACA ATATGTCTAT TACGAATACA CCAACAAGTA ATGATGCCTG TCTGAGCATT GTGCATAGTT TGATGTGCCA TAGACAAGGT GGAGAGAGTG AAACATTTGC AAAAAGAGCA ATTGAAAGTT TGGTAAAGAA GCTGAAGGAG AAAAAAGATG AATTGGATTC TTTAATAACA GCTATAACTA CAAATGGAGC TCATCCTAGT AAATGTGTTA CCATACAGAG AACATTGGAT GGGAGGCTTC AGGTTAGTCT TATAA
MNR, transcribed, primer.
Transcript sequenceGAAATTGGAG ACATATTTGA TTTAAAAGGA AAAACTTGAA CAAATGGACA ATATGTCTAT TACGAATACA CCAACAAGTA ATGATGCCTG TCTGAGCATT GTGCATAGTT TGATGTGCCA TAGACAAGGT GGAGAGAGTG AAACATTTGC AAAAAGAGCA ATTGAAAGTT TGGTAAAGAA GCTGAAGGAG AAAAAAGATG AATTGGATTC TTTAATAACA GCTATAACTA CAAATGGAGC TCATCCTAGT AAATGTGTTA CCATACAGAG AACATTGGAT GGGAGGCTTC AGGTGGCTGG TCGGA
MNR, homologue to genomic MNR region.
Transcripts#ENSTtranscribedtranslatedATGSTOPlengthMNRENSPlocate
1ENST000003984171112917888365236ENSP00000381452show
2ENST000003429881153921988769646ENSP00000341551show
3ENST000005449261123415453199341ENSP00000443830show
4ENST00000452201113689021207475ENSP00000409551show
Shown are all Ensembl transcripts (ENSTs) currently annotated for the respective Ensembl gene (ENSG), Ensembl rel. 66_37.
final status: cMNR (cMNR) .

Culture data cell line   mutated   allele(s)  reference
Colo741 0 - WOODFORDRICHENS2001
CW2 0 - CGP_SANGER
DLD1 0 - WOODFORDRICHENS2001
GP2d 0 - WOODFORDRICHENS2001
GP5d 0 - CGP_SANGER
HCA7 0 - WOODFORDRICHENS2001
HCT116 0 - WOODFORDRICHENS2001
HCT15 0 - WOODFORDRICHENS2001
HCT8/HRT18 0 - WOODFORDRICHENS2001
KM12 0 - CGP_SANGER
LoVo 0 - WOODFORDRICHENS2001
LS174T 0 - WOODFORDRICHENS2001
LS180 0 - WOODFORDRICHENS2001
LS411 0 - WOODFORDRICHENS2001
NCIH630 0 - CGP_SANGER
RKO 0 - CGP_SANGER
SNU-C2B 0 - CGP_SANGER
SW48 0 - WOODFORDRICHENS2001
VaCo5 0 - WOODFORDRICHENS2001

Show consequences concerning peptide sequence(s) of frameshift alleles m2/m1/p1/p2.


SelTarbase version latest, release 201307, last updated 20130701.

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