previous  nextENSG00000015532@45_36g.C7.45788966 (XYLT2) -> ENSG00000015532@66_37.C7.48433967
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Tract / statusC7 / cMNR -> Tx!   MNR_ensembl
First published byROECKEL2009 PubMed
Accession numberENSG00000015532
Gene (chromosome)XYLT2  ( 17 )   SOURCE
EnsemblENSG00000015532   SMART   GermOnline   GeneCards
NCBIEntrez Gene 64132   Unigene Hs.463416 (SAGE)   GeneCards 64132 

Mutation rate [%] Colon Endometrium Stomach Urothel
Cancer Adenoma Culture Cancer Cancer Cancer
25.334.8
(n=91)(n=23)

Genomic sequence
BLAST WWW
BLAST local
CCATGCCCTC TGGGGCTTCC AGAGCCCTTC ACCCTCCTTG CCTCTCCCAC TCCAGCAAGT CTCCAGACCC ACCTTCTTCG CCCGGAAGTT CGAGTCGACT GTGAACCAGG AGGTGCTGGA AATCCTGGAC TTCCACCTGT ATGGCAGCTA CCCCCCCGGC ACGCCAGCCC TCAAGGCCTA CTGGGAGAAC ACCTACGACG CGGCTGATGG CCCCAGTGGG CTCAGTGATG TCATGCTCAC TGCTTACACA GCCTTCGCCC GCCTCAGCCT GCACCATGCC GCCACTGCTG CACCCCCAAT GGGCACC
MNR, transcribed, primer.
PCR system1sense TCgAgTCgACTgTgAACCAg, antisense CATgACATCACTgAgCCCAC, product length 146, Ta 60.
Transcript sequenceCTGGTGTGGC TGCTCCCCCA ACGACTTCAA GCCACAGGAC TTCCTCCGGC TGCAGCAAGT CTCCAGACCC ACCTTCTTCG CCCGGAAGTT CGAGTCGACT GTGAACCAGG AGGTGCTGGA AATCCTGGAC TTCCACCTGT ATGGCAGCTA CCCCCCCGGC ACGCCAGCCC TCAAGGCCTA CTGGGAGAAC ACCTACGACG CGGCTGATGG CCCCAGTGGG CTCAGTGATG TCATGCTCAC TGCTTACACA GCCTTCGCCC GCCTCAGCCT GCACCATGCC GCCACTGCTG CACCCCCAAT GGGCACC
MNR, homologue to genomic MNR region.
Transcripts#ENSTtranscribedtranslatedATGSTOPlengthMNRENSPlocate
1ENST000000170031150264835071627ENSP00000017003show
2ENST000005097780011149145ENSP00000425511show
3ENST00000507602117203821071584ENSP00000426501show
4ENST00000376550116192632671583ENSP00000365733show
5ENST00000511654111355587174ENSP00000428350show
Shown are all Ensembl transcripts (ENSTs) currently annotated for the respective Ensembl gene (ENSG), Ensembl rel. 66_37.
final status: cMNR (cMNR) .

Culture data cell line   mutated   allele(s)  reference
Co115 0 wt ROECKEL2009
Colo60H 1 m1 ROECKEL2009
DLD1 0 wt ROECKEL2009
HCT116 0 wt ROECKEL2009
HCT8/HRT18 0 wt ROECKEL2009
HDC108 1 m1wt ROECKEL2009
HDC143 0 wt ROECKEL2009
HDC9 1 m1 ROECKEL2009
K073A_culture 0 wt ROECKEL2009
KM12 1 m1wt ROECKEL2009
LIM1215 1 m1wt ROECKEL2009
LIM2405 0 wt ROECKEL2009
LoVo 0 wt ROECKEL2009
LS174T 0 wt ROECKEL2009
LS180 0 wt ROECKEL2009
RKO 0 wt ROECKEL2009
SW48 1 m1wt ROECKEL2009
TC7 1 m1wt ROECKEL2009
TC71 0 wt ROECKEL2009
VaCo432 0 wt ROECKEL2009
VaCo457 0 wt ROECKEL2009
VaCo5 0 wt ROECKEL2009
VaCo6 1 m1wt ROECKEL2009

Show consequences concerning peptide sequence(s) of frameshift alleles m2/m1/p1/p2.


1 primers derived from ROECKEL2009.

SelTarbase version latest, release 201307, last updated 20130701.

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