previous  nextD26158.G9.288 (ELAVL3) -> ENSG00000196361@66_37.G9.11577605
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Tract / statusG9 / cMNR -> Tx!   MNR_ensembl
First published byWOERNER2003 PubMed
Accession numberD26158 gi:2340827
Gene (chromosome)ELAVL3  ( 19 )   SOURCE
alt. namesPLE21;DKFZp547J036
EnsemblENSG00000196361   SMART   GermOnline   GeneCards
NCBIEntrez Gene 1995   Unigene Hs.1701 (SAGE)   GeneCards 1995 

Mutation rate [%] Colon Endometrium Stomach Urothel
Cancer Adenoma Culture Cancer Cancer Cancer
35.645.533.36.7
(n=59)(n=11)(n=12)(n=15)

Genomic sequence
BLAST WWW
BLAST local
ACCCCTCCCC ATGACGAAGC CCCTATAAGA CATGGCTAAT TCATCACCAC CAAGCCACTC ATTGCCGCAG GCCCCTGGTG TGGGGACTGG GCGGTGAGCG GATGCGACCT GTTATCTCCA GCAGATACTG GGGGCCATGG AGTCTCAGGT GGGGGGGGGC CCGGCCGGCC CGGCCCTGCC CAACGGGCCA CTCCTTGGTA CAAATGGAGC CACTGACGAC AGCAAGACCA ACCTCATCGT CAACTACCTG CCCCAGAACA TGACCCAGGA TGAGTTCAAG AGTCTCTTCG GCAGCATTGG CGACATCGA
MNR, transcribed, primer.
PCR system1sense gATgCgACCTgTTATCTCCAg, antisense AggTTggTCTTgCTgTCgTC, product length 134, Ta 59.
Transcript sequenceGCACCAGAGG CCGCCCGGGC GGGACCCCAG CGTGAGCATC GGGCGCCCCC CTAGGAGTGC ACCACCCCCG GAGCCCCCCT CAACACGGAC CGCGCCCGCC GGGCACACAA GAATGGTCAC TCAGATACTG GGGGCCATGG AGTCTCAGGT GGGGGGGGGC CCGGCCGGCC CGGCCCTGCC CAACGGGCCA CTCCTTGGTA CAAATGGAGC CACTGACGAC AGCAAGACCA ACCTCATCGT CAACTACCTG CCCCAGAACA TGACCCAGGA TGAGTTCAAG AGTCTCTTCG GCAGCATTGG CGACATCGA
MNR, homologue to genomic MNR region.
Transcripts#ENSTtranscribedtranslatedATGSTOPlengthMNRENSPlocate
1ENST000003592271138114854682419ENSP00000352162show
2ENST000004386621138114644661419ENSP00000390878show
Shown are all Ensembl transcripts (ENSTs) currently annotated for the respective Ensembl gene (ENSG), Ensembl rel. 66_37.
final status: cMNR (cMNR) .

Culture data cell line   mutated   allele(s)  reference
Co115 1 m1wt WOERNER2010
Colo60H 1 wtp1 WOERNER2010
HCT116 0 wt WOERNER2010
KM12 1 wtp1 WOERNER2010
LoVo 0 wt WOERNER2010
LS174T 0 wt WOERNER2010
LS180 0 wt WOERNER2010
RKO 1 m1wt WOERNER2010
SW48 0 wt WOERNER2010
TC7 0 wt WOERNER2010
TC71 1 m1wt WOERNER2010

Show consequences concerning peptide sequence(s) of frameshift alleles m2/m1/p1/p2.


1 primers derived from WOERNER2005.

SelTarbase version latest, release 201307, last updated 20130701.

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