previous  nextAF058319.C9.1225 (SLC23A2) -> ENSG00000089057@66_37.C9.4850569
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Tract / statusC9 / cMNR -> Tx!   MNR_ensembl
First published byWOERNER2001 PubMed
Accession numberAF058319 gi:3789788
Gene (chromosome)SLC23A2  ( 20 )   SOURCE
alt. namesYSPL2;SVCT2;SLC23A1
EnsemblENSG00000089057   SMART   GermOnline   GeneCards
NCBIEntrez Gene 9962   Unigene Hs.516866 (SAGE)   GeneCards 9962 

Mutation rate [%] Colon Endometrium Stomach Urothel
Cancer Adenoma Culture Cancer Cancer Cancer
42.081.841.740.0
(n=69)(n=11)(n=12)(n=15)

Genomic sequence
BLAST WWW
BLAST local
AGCATTCATG GTTGTTTTCC TCCCACAGTT CAGTGGGGAC TGCCCACCGT GTCTGCGGCC GGTGTCATCG GCATGCTCAG TGCCGTGGTC GCCAGCATCA TCGAGTCTAT TGGTGACTAC TACGCCTGTG CACGGCTGTC CTGTGCCCCA CCCCCCCCCA TCCACGCAAT AAACAGGTAC GTTCCTGAGA AGACAAGTTC CTGATTGGTC CCAGCACCTT GTTACTTTGT TCTTAGGTTT ACATTACCTT GAAGACAAAA CCAAGAGTTT CAGCAGGAGC CCAGCCAAGC AGCAGGACTC TAGCGACTG
MNR, transcribed, primer.
PCR system1sense gACTACTACgCCTgTgCACg, antisense TgTTTATTgCgTggATggg, product length 61, Ta 58.
Transcript sequenceGCCCCGTGGT TTAAGGTTCC ATACCCATTT CAGTGGGGAC TGCCCACCGT GTCTGCGGCC GGTGTCATCG GCATGCTCAG TGCCGTGGTC GCCAGCATCA TCGAGTCTAT TGGTGACTAC TACGCCTGTG CACGGCTGTC CTGTGCCCCA CCCCCCCCCA TCCACGCAAT AAACAGGGGA ATTTTCGTGG AAGGCCTCTC CTGTGTTCTT GATGGCATAT TTGGTACTGG GAATGGCTCT ACTTCATCCA GTCCCAACAT TGGAGTTTTG GGAATTACAA AGGTCGGCAG CCGCCGCGTG ATACAGTGC
MNR, homologue to genomic MNR region.
Transcripts#ENSTtranscribedtranslatedATGSTOPlengthMNRENSPlocate
1ENST0000037933311394234769621618ENSP00000368637show
2ENST0000033824411376232969441600ENSP00000344322show
3ENST00000423430112917911494ENSP00000396364show
4ENST0000046835510019341591--
5ENST0000049633100761--
6ENST0000042475011384199523751266ENSP00000406601show
Shown are all Ensembl transcripts (ENSTs) currently annotated for the respective Ensembl gene (ENSG), Ensembl rel. 66_37.
final status: cMNR (cMNR) .

Culture data cell line   mutated   allele(s)  reference
Co115 0 wt WOERNER2001
Colo60H 1 m1wt WOERNER2001
HCT116 1 m1wt WOERNER2001
KM12 1 wtp1 WOERNER2001
LoVo 0 wt WOERNER2001
LS174T 1 m1wt WOERNER2001
LS180 1 m1wt WOERNER2001
RKO 1 m1 WOERNER2001
SW48 1 wtp1 WOERNER2001
TC7 1 m1wt INTERN9999
TC71 1 m1wt INTERN9999

Show consequences concerning peptide sequence(s) of frameshift alleles m2/m1/p1/p2.


1 primers derived from WOERNER2001.

SelTarbase version latest, release 201307, last updated 20130701.

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