previous  nextAF024714.T5.820 (AIM2) -> ENSG00000163568@66_37.T5.159035937
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Tract / statusT5 / cMNR -> Tx!   MNR_ensembl
First published byWOERNER2007 PubMed
Accession numberAF024714 gi:2558941
Gene (chromosome)AIM2  ( 1 )   SOURCE
EnsemblENSG00000163568   SMART   GermOnline   GeneCards
NCBIEntrez Gene 9447   Unigene Hs.281898 (SAGE)   GeneCards 9447 

Mutation rate [%] Colon Endometrium Stomach Urothel
Cancer Adenoma Culture Cancer Cancer Cancer
0.00.0
(n=16)(n=15)

Genomic sequence
BLAST WWW
BLAST local
AGGAATCTAT CAGAGAAGGG TTTCAGAAGC GCTGTTTGCC AGTTATGGTA CTGAAAGCAA AGAAGCCCTT CACGTTTGAG ACCCAAGAAG GCAAGCAGGA GATGTTTCAT GCTACAGTGG CTACAGAAAA GGAATTCTTC TTTGTAAAAG TTTTTAATAC ACTGCTGAAA GATAAATTCA TTCCAAAGAG AATAATTATA ATAGCAAGAT ATTATCGGCA CAGTGGTTTC TTAGAGGTAA ATAGCGCCTC ACGTGTGTTA GATGCTGAAT CTGACCAAAA GGTTAATGTC CCGCTGAACA TTATC
MNR, transcribed, primer.
Transcript sequenceAGGAATCTAT CAGAGAAGGG TTTCAGAAGC GCTGTTTGCC AGTTATGGTA CTGAAAGCAA AGAAGCCCTT CACGTTTGAG ACCCAAGAAG GCAAGCAGGA GATGTTTCAT GCTACAGTGG CTACAGAAAA GGAATTCTTC TTTGTAAAAG TTTTTAATAC ACTGCTGAAA GATAAATTCA TTCCAAAGAG AATAATTATA ATAGCAAGAT ATTATCGGCA CAGTGGTTTC TTAGAGGTAA ATAGCGCCTC ACGTGTGTTA GATGCTGAAT CTGACCAAAA GGTTAATGTC CCGCTGAACA TTATC
MNR, homologue to genomic MNR region.
Transcripts#ENSTtranscribedtranslatedATGSTOPlengthMNRENSPlocate
1ENST000003681301129013221529864ENSP00000357112show
2ENST0000048182900508--
3ENST000003681291194598594257ENSP00000357111show
4ENST0000041176800423834832ENSP00000405197show
Shown are all Ensembl transcripts (ENSTs) currently annotated for the respective Ensembl gene (ENSG), Ensembl rel. 66_37.
final status: cMNR (cMNR) .

Culture data cell line   mutated   allele(s)  reference
Colo60H 0 wt WOERNER2007
HCT116 0 wt WOERNER2007
HCT8/HRT18 0 wt WOERNER2007
KM12 0 wt WOERNER2007
LoVo 0 wt WOERNER2007
LS174T 0 wt WOERNER2007
LS180 0 wt WOERNER2007
RKO 0 wt WOERNER2007
SW48 0 wt WOERNER2007
TC7 0 wt WOERNER2007
TC71 0 wt WOERNER2007
VaCo432 0 wt WOERNER2007
VaCo457 0 wt WOERNER2007
VaCo5 0 wt WOERNER2007
VaCo6 0 wt WOERNER2007

Show consequences concerning peptide sequence(s) of frameshift alleles m2/m1/p1/p2.


SelTarbase version latest, release 201307, last updated 20130701.

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