previous  nextAB010639.C6.569 (TAPBP) -> ensembl_6@66_37.C6.33273072
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Tract / statusC6 / cMNR -> Tx!   MNR_ensembl
First published byKLOOR2005B PubMed
Accession numberAB010639 gi:3204511
Gene (chromosome)TAPBP  ( 6 )   SOURCE
alt. namesTapasin
EnsemblENSG00000112493   SMART   GermOnline   GeneCards
NCBIEntrez Gene 6892   Unigene Hs.370937 (SAGE)   GeneCards 6892 

Mutation rate [%] Colon Endometrium Stomach Urothel
Cancer Adenoma Culture Cancer Cancer Cancer
2.4
(n=42)

Genomic sequence
BLAST WWW
BLAST local
TTTTTTTCTC CTTCTTTCTC TCCCTCATGC CCCTCCCAAC CCCTCATCTC CCTGTCTTCC TCAGTGGTAC TGACTGTCCT CACCCACACC CCTGCCCCTC GAGTGAGACT GGGACAAGAT GCTCTGCTGG ACTTGAGCTT TGCCTACATG CCCCCCACCT CCGAGGCCGC CTCATCTCTG GCTCCGGGTC CCCCTCCCTT TGGGCTAGAG TGGCGACGCC AGCACCTGGG TAAGGGACAT CTGCTCCTGG CTGCAACTCC TGGGCTGAAT GGCCAGATGC CAGCAGCCCA AGAAGGGGCC GTGGCA
MNR, transcribed, primer.
PCR system1sense gCTCTgCTggACTTgAgCTT, antisense CCAggAgCAgATgTCCCTTA, product length 130, Ta 58.
Transcript sequenceTCCAGCCTCT TGCGACCACA GCCAGAGCCT CAGCAGGAGC CTGTTCTCAT CACCATGGCA ACAGTGGTAC TGACTGTCCT CACCCACACC CCTGCCCCTC GAGTGAGACT GGGACAAGAT GCTCTGCTGG ACTTGAGCTT TGCCTACATG CCCCCCACCT CCGAGGCCGC CTCATCTCTG GCTCCGGGTC CCCCTCCCTT TGGGCTAGAG TGGCGACGCC AGCACCTGGG TAAGGGACAT CTGCTCCTGG CTGCAACTCC TGGGCTGAAT GGCCAAATGC CAGCAGCCCA AGAAGGGGCC GTGGCA
MNR, homologue to genomic MNR region.
Transcripts#ENSTtranscribedtranslatedATGSTOPlengthMNRENSPlocate
1ENST00000467834002887--
2ENST000003745681121116123684820ENSP00000363696show
3ENST000003745721134716943766902ENSP00000363700show
4ENST000004978371001337571--
5ENST000003951141117216871824727ENSP00000378546show
6ENST000004944321002202564--
7ENST000004601531001239556--
8ENST00000456051116615612300ENSP00000415565show
9ENST0000047329300726--
10ENST000005527791131916661665874ENSP00000446854show
11ENST000005503301131914051404613ENSP00000450358show
Shown are all Ensembl transcripts (ENSTs) currently annotated for the respective Ensembl gene (ENSG), Ensembl rel. 66_37.
final status: cMNR (cMNR) .

Show consequences concerning peptide sequence(s) of frameshift alleles m2/m1/p1/p2.


1 primers derived from KLOOR2005B.

SelTarbase version latest, release 201307, last updated 20130701.

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